diff --git a/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.js b/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.js
index 671f927..1a8b52f 100644
--- a/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.js
+++ b/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.js
@@ -16,9 +16,15 @@
 			});
 		}
 
-		frm.get_field("doctypes_to_be_ignored").grid.cannot_add_rows = true;
-		frm.fields_dict["doctypes_to_be_ignored"].grid.set_column_disp("no_of_docs", false);
-		frm.refresh_field("doctypes_to_be_ignored");
+
+		frm.get_field('doctypes_to_be_ignored').grid.cannot_add_rows = true;
+		frm.fields_dict['doctypes_to_be_ignored'].grid.set_column_disp('no_of_docs', false);
+		frm.fields_dict['doctypes_to_be_ignored'].grid.set_column_disp('done', false);
+		frm.refresh_field('doctypes_to_be_ignored');
+
+		frm.get_field('doctypes').grid.cannot_add_rows = true;
+		frm.fields_dict['doctypes'].grid.set_column_disp('no_of_docs', true);
+		frm.refresh_field('doctypes');
 	},
 
 	refresh: function (frm) {
diff --git a/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.json b/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.json
index a9e04d3..6a84841 100644
--- a/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.json
+++ b/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.json
@@ -15,6 +15,7 @@
   "reset_company_default_values",
   "clear_notifications",
   "delete_transactions",
+  "initialize_doctypes_table",
   "section_break_tbej",
   "doctypes",
   "doctypes_to_be_ignored",
@@ -110,12 +111,19 @@
    "label": "Delete Transactions",
    "no_copy": 1,
    "read_only": 1
+  },
+  {
+   "default": "0",
+   "fieldname": "initialize_doctypes_table",
+   "fieldtype": "Check",
+   "label": "Initialize Summary Table",
+   "read_only": 1
   }
  ],
  "index_web_pages_for_search": 1,
  "is_submittable": 1,
  "links": [],
- "modified": "2024-02-03 14:40:40.207482",
+ "modified": "2024-02-03 20:48:34.107577",
  "modified_by": "Administrator",
  "module": "Setup",
  "name": "Transaction Deletion Record",
diff --git a/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.py b/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.py
index f1f6a5b..5a5a827 100644
--- a/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.py
+++ b/erpnext/setup/doctype/transaction_deletion_record/transaction_deletion_record.py
@@ -30,6 +30,7 @@
 		delete_transactions: DF.Check
 		doctypes: DF.Table[TransactionDeletionRecordItem]
 		doctypes_to_be_ignored: DF.Table[TransactionDeletionRecordItem]
+		initialize_doctypes_table: DF.Check
 		reset_company_default_values: DF.Check
 		status: DF.Literal["Queued", "Running", "Failed", "Completed", "Cancelled"]
 	# end: auto-generated types
@@ -79,8 +80,10 @@
 		self.delete_bins()
 		self.delete_lead_addresses()
 		self.reset_company_values()
-		clear_notifications()
-		self.db_set("clear_notifications", 1)
+		if not self.clear_notifications:
+			clear_notifications()
+			self.db_set("clear_notifications", 1)
+		self.initialize_doctypes_to_be_deleted_table()
 		self.delete_company_transactions()
 
 	def populate_doctypes_to_be_ignored_table(self):
@@ -89,92 +92,108 @@
 			self.append("doctypes_to_be_ignored", {"doctype_name": doctype})
 
 	def delete_bins(self):
-		frappe.db.sql(
-			"""delete from `tabBin` where warehouse in
-				(select name from tabWarehouse where company=%s)""",
-			self.company,
-		)
-		self.db_set("delete_bin_data", 1)
+		if not self.delete_bin_data:
+			frappe.db.sql(
+				"""delete from `tabBin` where warehouse in
+					(select name from tabWarehouse where company=%s)""",
+				self.company,
+			)
+			self.db_set("delete_bin_data", 1)
 
 	def delete_lead_addresses(self):
 		"""Delete addresses to which leads are linked"""
-		leads = frappe.get_all("Lead", filters={"company": self.company})
-		leads = ["'%s'" % row.get("name") for row in leads]
-		addresses = []
-		if leads:
-			addresses = frappe.db.sql_list(
-				"""select parent from `tabDynamic Link` where link_name
-				in ({leads})""".format(
-					leads=",".join(leads)
-				)
-			)
-
-			if addresses:
-				addresses = ["%s" % frappe.db.escape(addr) for addr in addresses]
-
-				frappe.db.sql(
-					"""delete from `tabAddress` where name in ({addresses}) and
-					name not in (select distinct dl1.parent from `tabDynamic Link` dl1
-					inner join `tabDynamic Link` dl2 on dl1.parent=dl2.parent
-					and dl1.link_doctype<>dl2.link_doctype)""".format(
-						addresses=",".join(addresses)
-					)
-				)
-
-				frappe.db.sql(
-					"""delete from `tabDynamic Link` where link_doctype='Lead'
-					and parenttype='Address' and link_name in ({leads})""".format(
+		if not self.delete_leads_and_addresses:
+			leads = frappe.get_all("Lead", filters={"company": self.company})
+			leads = ["'%s'" % row.get("name") for row in leads]
+			addresses = []
+			if leads:
+				addresses = frappe.db.sql_list(
+					"""select parent from `tabDynamic Link` where link_name
+					in ({leads})""".format(
 						leads=",".join(leads)
 					)
 				)
 
-			frappe.db.sql(
-				"""update `tabCustomer` set lead_name=NULL where lead_name in ({leads})""".format(
-					leads=",".join(leads)
+				if addresses:
+					addresses = ["%s" % frappe.db.escape(addr) for addr in addresses]
+
+					frappe.db.sql(
+						"""delete from `tabAddress` where name in ({addresses}) and
+						name not in (select distinct dl1.parent from `tabDynamic Link` dl1
+						inner join `tabDynamic Link` dl2 on dl1.parent=dl2.parent
+						and dl1.link_doctype<>dl2.link_doctype)""".format(
+							addresses=",".join(addresses)
+						)
+					)
+
+					frappe.db.sql(
+						"""delete from `tabDynamic Link` where link_doctype='Lead'
+						and parenttype='Address' and link_name in ({leads})""".format(
+							leads=",".join(leads)
+						)
+					)
+
+				frappe.db.sql(
+					"""update `tabCustomer` set lead_name=NULL where lead_name in ({leads})""".format(
+						leads=",".join(leads)
+					)
 				)
-			)
-		self.db_set("delete_leads_and_addresses", 1)
+			self.db_set("delete_leads_and_addresses", 1)
 
 	def reset_company_values(self):
-		company_obj = frappe.get_doc("Company", self.company)
-		company_obj.total_monthly_sales = 0
-		company_obj.sales_monthly_history = None
-		company_obj.save()
-		self.db_set("reset_company_default_values", 1)
+		if not self.reset_company_default_values:
+			company_obj = frappe.get_doc("Company", self.company)
+			company_obj.total_monthly_sales = 0
+			company_obj.sales_monthly_history = None
+			company_obj.save()
+			self.db_set("reset_company_default_values", 1)
+
+	def initialize_doctypes_to_be_deleted_table(self):
+		if not self.initialize_doctypes_table:
+			doctypes_to_be_ignored_list = self.get_doctypes_to_be_ignored_list()
+			docfields = self.get_doctypes_with_company_field(doctypes_to_be_ignored_list)
+			tables = self.get_all_child_doctypes()
+			for docfield in docfields:
+				if docfield["parent"] != self.doctype:
+					no_of_docs = self.get_number_of_docs_linked_with_specified_company(
+						docfield["parent"], docfield["fieldname"]
+					)
+					if no_of_docs > 0:
+						# Initialize
+						self.populate_doctypes_table(tables, docfield["parent"], docfield["fieldname"], 0)
+			self.db_set("initialize_doctypes_table", 1)
 
 	def delete_company_transactions(self):
-		doctypes_to_be_ignored_list = self.get_doctypes_to_be_ignored_list()
-		docfields = self.get_doctypes_with_company_field(doctypes_to_be_ignored_list)
+		if not self.delete_transactions:
+			doctypes_to_be_ignored_list = self.get_doctypes_to_be_ignored_list()
+			docfields = self.get_doctypes_with_company_field(doctypes_to_be_ignored_list)
 
-		tables = self.get_all_child_doctypes()
-		for docfield in docfields:
-			if docfield["parent"] != self.doctype:
-				no_of_docs = self.get_number_of_docs_linked_with_specified_company(
-					docfield["parent"], docfield["fieldname"]
-				)
-
-				if no_of_docs > 0:
-					self.delete_version_log(docfield["parent"], docfield["fieldname"])
-
-					reference_docs = frappe.get_all(
-						docfield["parent"], filters={docfield["fieldname"]: self.company}
+			tables = self.get_all_child_doctypes()
+			for docfield in self.doctypes:
+				if docfield.doctype_name != self.doctype:
+					no_of_docs = self.get_number_of_docs_linked_with_specified_company(
+						docfield.doctype_name, docfield.docfield_name
 					)
-					reference_doc_names = [r.name for r in reference_docs]
+					if no_of_docs > 0:
+						reference_docs = frappe.get_all(
+							docfield.doctype_name, filters={docfield.docfield_name: self.company}, limit=self.batch_size
+						)
+						reference_doc_names = [r.name for r in reference_docs]
 
-					self.delete_communications(docfield["parent"], reference_doc_names)
-					self.delete_comments(docfield["parent"], reference_doc_names)
-					self.unlink_attachments(docfield["parent"], reference_doc_names)
+						self.delete_version_log(docfield.doctype_name, reference_doc_names)
+						self.delete_communications(docfield.doctype_name, reference_doc_names)
+						self.delete_comments(docfield.doctype_name, reference_doc_names)
+						self.unlink_attachments(docfield.doctype_name, reference_doc_names)
 
-					self.populate_doctypes_table(tables, docfield["parent"], no_of_docs)
+						self.delete_child_tables(docfield.doctype_name, reference_doc_names)
+						self.delete_docs_linked_with_specified_company(docfield.doctype_name, docfield.docfield_name)
 
-					self.delete_child_tables(docfield["parent"], docfield["fieldname"])
-					self.delete_docs_linked_with_specified_company(docfield["parent"], docfield["fieldname"])
-
-					naming_series = frappe.db.get_value("DocType", docfield["parent"], "autoname")
-					if naming_series:
-						if "#" in naming_series:
-							self.update_naming_series(naming_series, docfield["parent"])
-		self.db_set("delete_transactions", 1)
+						naming_series = frappe.db.get_value("DocType", docfield.doctype_name, "autoname")
+						# TODO: do this at the end of each doctype
+						if naming_series:
+							if "#" in naming_series:
+								self.update_naming_series(naming_series, docfield.doctype_name)
+			self.db_set("delete_transactions", 1)
 
 	def get_doctypes_to_be_ignored_list(self):
 		singles = frappe.get_all("DocType", filters={"issingle": 1}, pluck="name")
@@ -203,22 +222,21 @@
 	def get_number_of_docs_linked_with_specified_company(self, doctype, company_fieldname):
 		return frappe.db.count(doctype, {company_fieldname: self.company})
 
-	def populate_doctypes_table(self, tables, doctype, no_of_docs):
+	def populate_doctypes_table(self, tables, doctype, fieldname, no_of_docs):
+		self.flags.ignore_validate_update_after_submit = True
 		if doctype not in tables:
-			self.append("doctypes", {"doctype_name": doctype, "no_of_docs": no_of_docs})
+			self.append(
+				"doctypes", {"doctype_name": doctype, "docfield_name": fieldname, "no_of_docs": no_of_docs}
+			)
+		self.save(ignore_permissions=True)
 
-	def delete_child_tables(self, doctype, company_fieldname):
-		parent_docs_to_be_deleted = frappe.get_all(
-			doctype, {company_fieldname: self.company}, pluck="name"
-		)
-
+	def delete_child_tables(self, doctype, reference_doc_names):
 		child_tables = frappe.get_all(
 			"DocField", filters={"fieldtype": "Table", "parent": doctype}, pluck="options"
 		)
 
-		for batch in create_batch(parent_docs_to_be_deleted, self.batch_size):
-			for table in child_tables:
-				frappe.db.delete(table, {"parent": ["in", batch]})
+		for table in child_tables:
+			frappe.db.delete(table, {"parent": ["in", reference_doc_names]})
 
 	def delete_docs_linked_with_specified_company(self, doctype, company_fieldname):
 		frappe.db.delete(doctype, {company_fieldname: self.company})
@@ -242,17 +260,11 @@
 
 		frappe.db.sql("""update `tabSeries` set current = %s where name=%s""", (last, prefix))
 
-	def delete_version_log(self, doctype, company_fieldname):
-		dt = qb.DocType(doctype)
-		names = qb.from_(dt).select(dt.name).where(dt[company_fieldname] == self.company).run(as_list=1)
-		names = [x[0] for x in names]
-
-		if names:
-			versions = qb.DocType("Version")
-			for batch in create_batch(names, self.batch_size):
-				qb.from_(versions).delete().where(
-					(versions.ref_doctype == doctype) & (versions.docname.isin(batch))
-				).run()
+	def delete_version_log(self, doctype, docnames):
+		versions = qb.DocType("Version")
+		qb.from_(versions).delete().where(
+			(versions.ref_doctype == doctype) & (versions.docname.isin(docnames))
+		).run()
 
 	def delete_communications(self, doctype, reference_doc_names):
 		communications = frappe.get_all(
diff --git a/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.json b/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.json
index be0be94..4e5e184 100644
--- a/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.json
+++ b/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.json
@@ -6,7 +6,9 @@
  "engine": "InnoDB",
  "field_order": [
   "doctype_name",
-  "no_of_docs"
+  "docfield_name",
+  "no_of_docs",
+  "done"
  ],
  "fields": [
   {
@@ -22,12 +24,24 @@
    "fieldtype": "Data",
    "in_list_view": 1,
    "label": "Number of Docs"
+  },
+  {
+   "default": "0",
+   "fieldname": "done",
+   "fieldtype": "Check",
+   "in_list_view": 1,
+   "label": "Done"
+  },
+  {
+   "fieldname": "docfield_name",
+   "fieldtype": "Data",
+   "label": "DocField Name"
   }
  ],
  "index_web_pages_for_search": 1,
  "istable": 1,
  "links": [],
- "modified": "2021-05-08 23:10:46.166744",
+ "modified": "2024-02-03 21:06:32.274445",
  "modified_by": "Administrator",
  "module": "Setup",
  "name": "Transaction Deletion Record Item",
@@ -35,5 +49,6 @@
  "permissions": [],
  "sort_field": "modified",
  "sort_order": "DESC",
+ "states": [],
  "track_changes": 1
 }
\ No newline at end of file
diff --git a/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.py b/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.py
index f154cdb..ce716ac 100644
--- a/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.py
+++ b/erpnext/setup/doctype/transaction_deletion_record_item/transaction_deletion_record_item.py
@@ -15,7 +15,9 @@
 	if TYPE_CHECKING:
 		from frappe.types import DF
 
+		docfield_name: DF.Data | None
 		doctype_name: DF.Link
+		done: DF.Check
 		no_of_docs: DF.Data | None
 		parent: DF.Data
 		parentfield: DF.Data