diff --git a/erpnext/accounts/doctype/bank_clearance/bank_clearance.py b/erpnext/accounts/doctype/bank_clearance/bank_clearance.py
index 0f617b5..98ba399 100644
--- a/erpnext/accounts/doctype/bank_clearance/bank_clearance.py
+++ b/erpnext/accounts/doctype/bank_clearance/bank_clearance.py
@@ -118,6 +118,7 @@
 			)
 			.where(loan_repayment.docstatus == 1)
 			.where(loan_repayment.clearance_date.isnull())
+			.where(loan_repayment.repay_from_salary == 0)
 			.where(loan_repayment.posting_date >= self.from_date)
 			.where(loan_repayment.posting_date <= self.to_date)
 			.where(loan_repayment.payment_account.isin([self.bank_account, self.account]))
diff --git a/erpnext/accounts/doctype/bank_reconciliation_tool/bank_reconciliation_tool.py b/erpnext/accounts/doctype/bank_reconciliation_tool/bank_reconciliation_tool.py
index 4c25d7c..0efe086 100644
--- a/erpnext/accounts/doctype/bank_reconciliation_tool/bank_reconciliation_tool.py
+++ b/erpnext/accounts/doctype/bank_reconciliation_tool/bank_reconciliation_tool.py
@@ -467,6 +467,7 @@
 			loan_repayment.posting_date,
 		)
 		.where(loan_repayment.docstatus == 1)
+		.where(loan_repayment.repay_from_salary == 0)
 		.where(loan_repayment.clearance_date.isnull())
 		.where(loan_repayment.payment_account == bank_account)
 	)
diff --git a/erpnext/accounts/report/bank_reconciliation_statement/bank_reconciliation_statement.py b/erpnext/accounts/report/bank_reconciliation_statement/bank_reconciliation_statement.py
index 2ac1fea..f3ccc86 100644
--- a/erpnext/accounts/report/bank_reconciliation_statement/bank_reconciliation_statement.py
+++ b/erpnext/accounts/report/bank_reconciliation_statement/bank_reconciliation_statement.py
@@ -203,7 +203,7 @@
 			posting_date = (loan_doc.posting_date).as_("posting_date")
 			account = loan_doc.payment_account
 
-		entries = (
+		query = (
 			frappe.qb.from_(loan_doc)
 			.select(
 				ConstantColumn(doctype).as_("payment_document"),
@@ -217,9 +217,12 @@
 			.where(account == filters.get("account"))
 			.where(posting_date <= getdate(filters.get("report_date")))
 			.where(ifnull(loan_doc.clearance_date, "4000-01-01") > getdate(filters.get("report_date")))
-			.run(as_dict=1)
 		)
 
+		if doctype == "Loan Repayment":
+			query.where(loan_doc.repay_from_salary == 0)
+
+		entries = query.run(as_dict=1)
 		loan_docs.extend(entries)
 
 	return loan_docs