diff --git a/erpnext/stock/stock_ledger.py b/erpnext/stock/stock_ledger.py
index 9fe89c3..94bd307 100644
--- a/erpnext/stock/stock_ledger.py
+++ b/erpnext/stock/stock_ledger.py
@@ -215,7 +215,7 @@
 		"""
 		self.data.setdefault(args.warehouse, frappe._dict())
 		warehouse_dict = self.data[args.warehouse]
-		previous_sle = self.get_previous_sle_of_current_voucher(args)
+		previous_sle = get_previous_sle_of_current_voucher(args)
 		warehouse_dict.previous_sle = previous_sle
 
 		for key in ("qty_after_transaction", "valuation_rate", "stock_value"):
@@ -227,29 +227,6 @@
 			"stock_value_difference": 0.0
 		})
 
-	def get_previous_sle_of_current_voucher(self, args):
-		"""get stock ledger entries filtered by specific posting datetime conditions"""
-
-		args['time_format'] = '%H:%i:%s'
-		if not args.get("posting_date"):
-			args["posting_date"] = "1900-01-01"
-		if not args.get("posting_time"):
-			args["posting_time"] = "00:00"
-
-		sle = frappe.db.sql("""
-			select *, timestamp(posting_date, posting_time) as "timestamp"
-			from `tabStock Ledger Entry`
-			where item_code = %(item_code)s
-				and warehouse = %(warehouse)s
-				and is_cancelled = 0
-				and timestamp(posting_date, time_format(posting_time, %(time_format)s)) < timestamp(%(posting_date)s, time_format(%(posting_time)s, %(time_format)s))
-			order by timestamp(posting_date, posting_time) desc, creation desc
-			limit 1
-			for update""", args, as_dict=1)
-
-		return sle[0] if sle else frappe._dict()
-
-
 	def build(self):
 		from erpnext.controllers.stock_controller import future_sle_exists
 
@@ -734,6 +711,35 @@
 			bin_doc.flags.via_stock_ledger_entry = True
 			bin_doc.save(ignore_permissions=True)
 
+
+def get_previous_sle_of_current_voucher(args, exclude_current_voucher=False):
+	"""get stock ledger entries filtered by specific posting datetime conditions"""
+
+	args['time_format'] = '%H:%i:%s'
+	if not args.get("posting_date"):
+		args["posting_date"] = "1900-01-01"
+	if not args.get("posting_time"):
+		args["posting_time"] = "00:00"
+
+	voucher_condition = ""
+	if exclude_current_voucher:
+		voucher_no = args.get("voucher_no")
+		voucher_condition = f"and voucher_no != '{voucher_no}'"
+
+	sle = frappe.db.sql("""
+		select *, timestamp(posting_date, posting_time) as "timestamp"
+		from `tabStock Ledger Entry`
+		where item_code = %(item_code)s
+			and warehouse = %(warehouse)s
+			and is_cancelled = 0
+			{voucher_condition}
+			and timestamp(posting_date, time_format(posting_time, %(time_format)s)) < timestamp(%(posting_date)s, time_format(%(posting_time)s, %(time_format)s))
+		order by timestamp(posting_date, posting_time) desc, creation desc
+		limit 1
+		for update""".format(voucher_condition=voucher_condition), args, as_dict=1)
+
+	return sle[0] if sle else frappe._dict()
+
 def get_previous_sle(args, for_update=False):
 	"""
 		get the last sle on or before the current time-bucket,
@@ -862,9 +868,24 @@
 	return valuation_rate
 
 def update_qty_in_future_sle(args, allow_negative_stock=None):
+	"""Recalculate Qty after Transaction in future SLEs based on current SLE."""
+	qty_shift = args.actual_qty
+
+	# find difference/shift in qty caused by stock reconciliation
+	if args.voucher_type == "Stock Reconciliation":
+		last_balance = get_previous_sle_of_current_voucher(
+			args,
+			exclude_current_voucher=True
+		).get("qty_after_transaction")
+		if last_balance is not None:
+			stock_reco_qty_shift = flt(args.qty_after_transaction) - flt(last_balance)
+		else:
+			stock_reco_qty_shift = args.qty_after_transaction
+		qty_shift = stock_reco_qty_shift
+
 	frappe.db.sql("""
 		update `tabStock Ledger Entry`
-		set qty_after_transaction = qty_after_transaction + {qty}
+		set qty_after_transaction = qty_after_transaction + {qty_shift}
 		where
 			item_code = %(item_code)s
 			and warehouse = %(warehouse)s
@@ -876,7 +897,7 @@
 					and creation > %(creation)s
 				)
 			)
-	""".format(qty=args.actual_qty), args)
+	""".format(qty_shift=qty_shift), args)
 
 	validate_negative_qty_in_future_sle(args, allow_negative_stock)
 
@@ -884,7 +905,7 @@
 	allow_negative_stock = allow_negative_stock \
 		or cint(frappe.db.get_single_value("Stock Settings", "allow_negative_stock"))
 
-	if args.actual_qty < 0 and not allow_negative_stock:
+	if (args.actual_qty < 0 or args.voucher_type == "Stock Reconciliation") and not allow_negative_stock:
 		sle = get_future_sle_with_negative_qty(args)
 		if sle:
 			message = _("{0} units of {1} needed in {2} on {3} {4} for {5} to complete this transaction.").format(